Acid X-Philes: Archaea
Acidophilic Archaea & Hyperacidotolerant, Near-Acidophilic Archaeal Neutriphiles
Introduction
This group includes organisms capable of thriving in hyperacidic conditions, most of which have an optimal growth pH of 5 or lower (OGpH<5), although a few have an OGpH slightly above this (e.g., Nanoarchaeum equitans, OGpH=6) but can nonetheless be found flourishing in hyperacidic environments (pH=0.5-1.5).
List of Archaeal Acidophiles & Acidotolerant Archaea by pH Range & by OGpH
Here organisms are listed first by the lower end of their pH range, then by the upper end of their pH range, then by OGpH, and for any organisms for which these properties are unknown, they will be listed in alphabetical order at the end.
Genus & Species | OGpH | pH range | Source |
---|---|---|---|
Ferroplasma acidarmanus | 1.2 | 0-2.5 | Edwards &al., 2000, Dopson &al.2003; Zhang &al., 2015 |
Acidiplasma aeolicum | 1.4-1.6 | 0-4 | Zhang &al., 2015 |
Picrophilus oshimae | 0.7-2.2 | ≥0-3.5 | Rampelotto, 2013, Johnson, 1998 |
Picrophilus torridus | 0.06-0.07 | ≥0-3.5 | Rampelotto, 2013, Johnson, 1998; Zhang &al., 2015 |
Ferroplasma thermophilum | 1 | 0.2-2.5 | Zhang &al., 2015 |
Acidianus sulfidivorans | 0.8-1.4 | 0.35-3 | Plumb &al. 2007; Zhang &al., 2015 |
Acidiplasma cupricumulans | 1-1.2 | 0.4-1.8 | Zhang &al., 2015 |
Thermoplasma acidophilum | 1.8 | 0.5-4 | Johnson, 1998; Zhang &al., 2015 |
Sulfolobus metallicus | ? | 1-4.5 | Johnson, 1998; Fashola &al., 2015; Zhang &al., 2015 |
Sulfurisphaera ohwakuensis | 2 | 1-5 | Zhang &al., 2015 |
Stygiolobus azoricus | 2.5-3 | 1-5.5 | Johnson, 1998; Zhang &al., 2015 |
Sulfolobus acidocaldarius | 2-3 | 1-5.9 | Johnson, 1998; Edwards &al., 2000; Zhang &al., 2015 |
Acidianus ambivalens | 2.5 | 1-3.5 | Johnson, 1998; Zhang &al., 2015 |
Thermoplasma volcanium | 2 | 1-4 | Johnson, 1998; Zhang &al., 2015 |
Metallosphaera hakonensis | 3 | 1-4 | Zhang &al., 2015 |
Metallosphaera prunae | 2 | 1-4.5 | Johnson, 1998; Zhang &al., 2015 |
Metallosphaera sedula | 2 | 1-4.5 | Johnson, 1998; Fashola &al., 2015; Zhang &al., 2015 |
Metallosphaera yellowstonensis | 2-3 | 1-4.5 | Zhang &al., 2015 |
Acidianus manzaensis | 1.2-2.5 | 1-5 | Ding &al. 2011; Zhang &al., 2015 |
Acidianus copahuensis | 2.5-3 | 1-5 | Zhang &al., 2015 |
Acidianus tengchongensis | 1.5-2.5 | 1-5.5 | He &al. 2004; Zhang &al., 2015 |
Acidianus infernus | 2 | 1-5.5 | Johnson, 1998; Zhang &al., 2015 |
Sulfurococcus yellowstonensis | 2-2.6 | 1-5.5 | Zhang &al., 2015 |
Sulfurococcus mirabilis | 2-2.6 | 1-5.8 | Zhang &al., 2015 |
Acidianus brierleyi | 1.5-2 | 1-6 | Johnson, 1998; Edwards &al., 2000; Fashola &al., 2015; Zhang &al., 2015 |
Ferroplasma acidiphilum | 1.7 | 1.3-2.2 | Fashola &al., 2015; Zhang &al., 2015 |
Sulfolobus tengchongensis | 3.5 | 1.7-6.5 | Zhang &al., 2015 |
Thermogymnomonas acidocola | 3 | 1.8-4 | Zhang &al., 2015 |
Sulfolobus solfataricus | 3 | 2-4 | Johnson, 1998, Dopson (2003); Zhang &al., 2015 |
Sulfolobus tokodaii | 2.5-3 | 2-5 | Dopson 2003; Zhang &al., 2015 |
Sulfolobus yangmingensis | 4 | 2-6 | Zhang &al., 2015 |
Metallosphaera cuprina | 3.5 | 2.5-5.5 | Zhang &al., 2015 |
Acidianus convivator | <4 | ? | () |
Acidianus pozzuoliensis | ? | ||
Acidianus sp. DSM 29099 | ? | ? | Zhang &al., 2015 |
Acidianus sp. RZ1 | ? | ? | Zhang &al., 2015 |
Candidatus Aenigmarchaeum subterraneum | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Cenarchaeum symbiosum A | <4 | ? | Herbold &al., 2017 |
Cuniculiplasma divulgatum | 1-1.2 | ? | Golyshina &al. 2016 |
Ferroplasma acidiphilum BRGM4 | ? | ? | Zhang &al., 2015 |
Ferroplasma cyprexacervatum | <4 | ? | () |
Halarchaeum acidiphilum | <4 | ? | () |
Candidatus Haloredivivus sp. | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Lainarchaeum andersonii | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Mancarchaeum acidiphilum | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Micrarchaeum acidiphilum | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Nanoarchaeum equitans | 6*; 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Nanobsidianus stetteri | ? | ||
Nanopusillus acidilobi sp. | ? | ||
Candidatus Nanosalina sp. | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Nanosalinarum sp. | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Nitrosoarchaeum koreensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosoarchaeum limnia | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosoarchaeum limnia | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosocosmicus oleophilus | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopelagicus brevis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus maritimus | <4 | ? | Lehtovirta-Morley &al., 2014; Herbold &al., 2017 |
Candidatus Nitrosopumilus viennensis | <4 | ? | Lehtovirta-Morley &al., 2014 |
Candidatus Nitrosopumilus sp. SJ | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. NF5 | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. AR1 | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. AR2 | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus salaria | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. D3C | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrososphaera evergladensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrososphaera viennensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrososphaera gargensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotalea okcheonensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotalea sinensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotalea devanaterra | 4-5 | ? | Lehtovirta-Morley &al., 2011 & 2014; Herbold &al., 2017 |
Candidatus Nitrosotalea bavarica | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotenuis uzonensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotenuis chungbukensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotenuis cloacae | <4 | ? | Herbold &al., 2017 |
Candidatus Parvarchaeum acidiphilum | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Parvarchaeum acidophilus | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Picrophilus sp. | 1 | ? | (Baker-Austin & Dopson, 2007) |
Sulfolobus hakonensis | <3 | ? | Johnson, 1998 |
Sulfolobus islandicus | <4 | ? | () |
Sulfolobus mirabilis | <3 | ? | Johnson, 1998 |
Sulfolobus neozealandicus | ? | ? | () | Sulfolobus rivotinct | ? | ? | Zhang &al., 2015 |
Sulfolobus shibatae | 3 | ? | Johnson, 1998; Zhang &al., 2015 |
Sulfolobus thuringiensis | ? | ? | () |
Sulfurococcus yellowstonii | ? | ? | Johnson, 1998 |
Thermococcus celer | 5.8 | ? | Zhang &al., 2015 |
Phylogenic Table of Archaeal Acidophiles and Acidotolerant Archaea
- Phylum: Euryarchaeota
- Class: Methanopyri
- Class: Methanococci
- Class: Eurythermia
- Superclass: Neobacteria
- Superphylum: DPANN group
- Phylum: Diapherotrites
- Phylum: Pacearchaeota
- Phylum: Aenigmarchaeota
- Phylum: Nanoarchaeota
- Phylum: Nanohaloarchaeota
- Phylum: Woesearchaeota
- Phyla: ARMAN
- Kingdom: Proteoarchaeota
- TACK group
- Thaumarchaeota
- Aigarchaeota
- Crenarchaeota
- Korarchaeota
- Bathyarchaeota
- Geoarchaeota
- Asgard group (“Asgardarchaeota”)
- Lokiarchaeota
- Odinarchaeota
- Thorarchaeota
- Heimdallarchaeota
Alphabetical List of Archaeal Acidophiles & Acidotolerant Archaea
Genus & Species | OGpH | pH range | Source |
---|---|---|---|
Acidianus ambivalens | 2.5 | 1-3.5 | Johnson, 1998; Zhang &al., 2015 |
Acidianus brierleyi | 1.5-2 | 1-6 | Johnson, 1998; Edwards &al., 2000; Fashola &al., 2015; Zhang &al., 2015 |
Acidianus copahuensis | 2.5-3 | 1-5 | Zhang &al., 2015 |
Acidianus infernus | 2 | 1-5.5 | Johnson, 1998; Zhang &al., 2015 |
Acidianus manzaensis | 1.2-2.5 | 1-5 | Ding &al. 2011; Zhang &al., 2015 |
Acidianus pozzuoliensis | ? | ||
Acidianus sulfidivorans | 0.8-1.4 | 0.35-3 | Plumb &al. 2007; Zhang &al., 2015 |
Acidianus tengchongensis | 1.5-2.5 | 1-5.5 | He &al. 2004; Zhang &al., 2015 |
Acidianus sp. DSM 29099 | ? | ? | Zhang &al., 2015 |
Acidianus sp. RZ1 | ? | ? | Zhang &al., 2015 |
Acidianus convivator | <4 | ? | () |
Acidiplasma aeolicum | 1.4-1.6 | 0-4 | Zhang &al., 2015 |
Acidiplasma cupricumulans | 1-1.2 | 0.4-1.8 | Zhang &al., 2015 |
Candidatus Aenigmarchaeum subterraneum | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Cenarchaeum symbiosum A | <4 | ? | Herbold &al., 2017 |
Cuniculiplasma divulgatum | 1-1.2 | ? | Golyshina &al. 2016 |
Ferroplasma acidarmanus | 1.2 | 0-2.5 | Edwards &al., 2000, Dopson &al.2003; Zhang &al., 2015 |
Ferroplasma acidiphilum | 1.7 | 1.3-2.2 | Fashola &al., 2015; Zhang &al., 2015 |
Ferroplasma acidiphilum BRGM4 | ? | ? | Zhang &al., 2015 |
Ferroplasma cyprexacervatum | <4 | ? | () |
Ferroplasma thermophilum | 1 | 0.2-2.5 | Zhang &al., 2015 |
Halarchaeum acidiphilum | <4 | ? | () |
Candidatus Haloredivivus sp. | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Lainarchaeum andersonii | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Candidatus Mancarchaeum acidiphilum | 0.5-1.5 | ? | Baker &al., 2006; Golyshina &al., 2017 |
Metallosphaera cuprina | 3.5 | 2.5-5.5 | Zhang &al., 2015 |
Metallosphaera hakonensis | 3 | 1-4 | Zhang &al., 2015 |
Metallosphaera prunae | 2 | 1-4.5 | Johnson, 1998; Zhang &al., 2015 |
Metallosphaera sedula | 2 | 1-4.5 | Johnson, 1998; Fashola &al., 2015; Zhang &al., 2015 |
Metallosphaera yellowstonensis | 2-3 | 1-4.5 | Zhang &al., 2015 |
Candidatus Micrarchaeum acidiphilum | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Nanoarchaeum equitans | 6*; 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Nanobsidianus stetteri | ? | ||
Nanopusillus acidilobi sp. | ? | ||
Candidatus Nanosalina sp. | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Nanosalinarum sp. | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Nitrosoarchaeum koreensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosoarchaeum limnia | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosoarchaeum limnia | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosocosmicus oleophilus | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopelagicus brevis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus maritimus | <4 | ? | Lehtovirta-Morley &al., 2014; Herbold &al., 2017 |
Candidatus Nitrosopumilus viennensis | <4 | ? | Lehtovirta-Morley &al., 2014 |
Candidatus Nitrosopumilus sp. SJ | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. NF5 | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. AR1 | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. AR2 | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus salaria | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosopumilus sp. D3C | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrososphaera evergladensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrososphaera viennensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrososphaera gargensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotalea okcheonensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotalea sinensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotalea devanaterra | 4-5 | ? | Lehtovirta-Morley &al., 2011 & 2014; Herbold &al., 2017 |
Candidatus Nitrosotalea bavarica | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotenuis uzonensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotenuis chungbukensis | <4 | ? | Herbold &al., 2017 |
Candidatus Nitrosotenuis cloacae | <4 | ? | Herbold &al., 2017 |
Candidatus Parvarchaeum acidiphilum | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Candidatus Parvarchaeum acidophilus | 0.5-1.5 | ? | Baker &al., 2006; Baker &al., 2010; Golyshina &al., 2017 |
Picrophilus sp. | 1 | ? | (Baker-Austin & Dopson, 2007) |
Picrophilus oshimae | 0.7-2.2 | ≥0-3.5 | Rampelotto, 2013, Johnson, 1998 |
Picrophilus torridus | 0.06-0.07 | ≥0-3.5 | Rampelotto, 2013, Johnson, 1998; Zhang &al., 2015 |
Stygiolobus azoricus | 2.5-3 | 1-5.5 | Johnson, 1998; Zhang &al., 2015 |
Sulfolobus acidocaldarius | 2-3 | 1-5.9 | Johnson, 1998; Edwards &al., 2000; Zhang &al., 2015 |
Sulfolobus hakonensis | <3 | ? | Johnson, 1998 |
Sulfolobus islandicus | <4 | ? | () |
Sulfolobus metallicus | ? | 1-4.5 | Johnson, 1998; Fashola &al., 2015; Zhang &al., 2015 |
Sulfolobus mirabilis | <3 | ? | Johnson, 1998 |
Sulfolobus neozealandicus | ? | ? | () | Sulfolobus rivotinct | ? | ? | Zhang &al., 2015 |
Sulfolobus shibatae | 3 | ? | Johnson, 1998; Zhang &al., 2015 |
Sulfolobus solfataricus | 3 | 2-4 | Johnson, 1998, Dopson (2003); Zhang &al., 2015 |
Sulfolobus tengchongensis | 3.5 | 1.7-6.5 | Zhang &al., 2015 |
Sulfolobus thuringiensis | ? | ? | () |
Sulfolobus tokodaii | 2.5-3 | 2-5 | Dopson 2003; Zhang &al., 2015 |
Sulfolobus yangmingensis | 4 | 2-6 | Zhang &al., 2015 |
Sulfurisphaera ohwakuensis | 2 | 1-5 | Zhang &al., 2015 |
Sulfurococcus mirabilis | 2-2.6 | 1-5.8 | Zhang &al., 2015 |
Sulfurococcus yellowstonensis | 2-2.6 | 1-5.5 | Zhang &al., 2015 |
Sulfurococcus yellowstonii | ? | ? | Johnson, 1998 |
Thermococcus celer | 5.8 | ? | Zhang &al., 2015 |
Thermogymnomonas acidocola | 3 | 1.8-4 | Zhang &al., 2015 |
Thermoplasma acidophilum | 1.8 | 0.5-4 | Johnson, 1998; Zhang &al., 2015 |
Thermoplasma volcanium | 2 | 1-4 | Johnson, 1998; Zhang &al., 2015 |
Ding &al., 2011
Dopson &al., 2003
Baker &al., 2010
Plumb &al., 2007
Whitman &al., 1999
"Nitrosotalea is an abundant, globally distributed genus of AOA found in acidic soils (Gubry-Rangin et al., 2011). Thirty per cent of the world's soils are considered acidic (pH < 5.5; von Uexk�ll & Mutert, 1995), and ammonia oxidation in low pH soils is dominated by AOA, rather than AOB (Gubry-Rangin et al., 2010; Lehtovirta-Morley et al., 2011)."
Craig W. Herbold, Laura E. Lehtovirta-Morley, Man-Young Jung, Nico Jehmlich, Bela Hausmann, Ping Han, Alexander Loy, Michael Pester, Luis A. Sayavedra-Soto, Sung-Keun Rhee, James I. Prosser, Graeme W. Nicol, Michael Wagner and Cecile Gubry-Rangin. Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. Environmental Microbiology (2017) 19(12), 4939�4952